concurve concurve-package

A description of the concurve R package

Statistical Computations

Compute consonance and surprisal distributions for a wide range of scenarios, along with likelihood functions.

curve_analytic()

Analytic Consonance Functions From Summary Statistics

curve_boot()

Generate Consonance Functions via Bootstrapping

curve_corr()

Consonance Functions for Correlations

curve_gen()

Consonance Functions For Linear Models, Generalized Linear Models, and Robust Linear Models

curve_lik()

Compute Profile Likelihood Functions

curve_lmer()

Consonance Functions For Linear & Non-Linear Mixed-Effects Models.

curve_mean()

Consonance Functions For Mean Differences

curve_meta()

Consonance Functions For Meta-Analytic Data

curve_model()

Construct Consonance Functions from Fitted Models

curve_region()

Confidence In A Parameter Region

curve_rev()

Reverse Engineer Consonance / Likelihood Functions Using the Point Estimate and Confidence Limits

curve_rstar()

Compute Second-Order Consonance Functions via the r* Statistic

curve_stan()

Consonance Functions From Monte Carlo Confidence Distributions

curve_stan_fit()

Sample a Stan Model and Build a Consonance Function

curve_surv()

Consonance Functions For Survival Data

curve_wrap()

Construct Consonance Functions from Any CI-Producing Function

curve_from_ratio()

Construct Consonance Function from Ratio Estimate

curve_from_se()

Construct Consonance Function from Standard Error

concurve_stan_file()

Locate Stan Programs Bundled With concurve

Database Integration

Connect to databases and construct consonance functions from query results.

curve_snowflake()

Construct Consonance Functions from Snowflake Query Results

curve_snowflake_batch()

Batch Process Multiple Snowflake Queries for Consonance Functions

Statistical Graphics

Plot the overall functions that were computed such as the consonance, surprisal, and likelihood functions.

ggcurve()

Plots Consonance, Surprisal, and Likelihood Functions

curve_compare()

Compare Two Functions and Produces An AUC Score

plot_compare()

Graph and Compare Consonance, Surprisal, and Likelihood Functions

curve_overlap()

Calculate Overlap Between Consonance Functions

plot_multi()

Plot Multiple Consonance Functions for Comparison

Statistical Reporting

Display the tables showing relevant statistics from the initial computations.

curve_table()

Produce Tables For concurve Functions

curve_summary()

Generate Summary Statistics for Consonance Objects

Data Export

Export consonance data to other tools and formats.

export_for_powerbi()

Export Consonance Data for Power BI

Likelihood Functions

Construct likelihood, log-likelihood, profile likelihood, and deviance functions from fitted models, and plot them.

as_curve_lik()

Package A Log-Likelihood Grid As A concurve Likelihood Object

curve_lik_glm()

Profile Likelihood Function For A Model Coefficient

curve_lik_exact()

Exact Likelihood Functions For Common Designs

curve_mpl()

Compute Modified Profile Likelihood Functions

curve_support()

Support (Likelihood) Intervals From A Likelihood Function

construct_likelihood()

Construct Likelihood Function for Statistical Models

plot(<likelihood_function>)

Plot likelihood function

ggplot_likelihood()

Plot likelihood using ggplot2

plotly_likelihood()

Interactive likelihood plot

plot_all_parameters()

Plot likelihood for all parameters

plot_ci_levels()

Plot likelihood with multiple confidence levels

plot_profile_vs_wald()

Compare profile and Wald confidence intervals

Likelihood Function Methods

S3 methods for objects returned by construct_likelihood().

coef(<likelihood_function>)

Extract coefficients from a likelihood function

confint(<likelihood_function>)

Confidence intervals for likelihood function parameters

logLik(<likelihood_function>)

Extract log-likelihood from a likelihood function

print(<likelihood_function>)

Print a likelihood function object

print(<summary.likelihood_function>)

Print a likelihood function summary

summary(<likelihood_function>)

Summarize a likelihood function object

vcov(<likelihood_function>)

Extract variance-covariance matrix from a likelihood function

Miscellaneous Functions

Some internal helper functions.

RobustMin()

Robust Min, an alternative to max() that doesn't throw a warning

RobustMax()

Robust Max, an alternative to max() that doesn't throw a warning