concurve
2.7.7
It is quite easy to generate tables of outputs for the various concurve functions and in different formats. Here we show how to do this with a simple example. First, we’ll simulate some fake data as usual, compare the means, and then produce a confidence function of the outputs.
library(concurve) #> Please see the documentation on https://data.lesslikely.com/concurve/ or by typing `help(concurve)` GroupA <- rnorm(500) GroupB <- rnorm(500) RandomData <- data.frame(GroupA, GroupB) intervalsdf <- curve_mean(GroupA, GroupB, data = RandomData, method = "default" )
The results are now stored in intervalsdf. Using the curve_table() function, we can now produce a high quality table with several values of interest.
(x <- curve_table(data = intervalsdf[[1]], format = "image"))
Lower Limit |
Upper Limit |
Interval Width |
Interval Level (%) |
CDF |
P-value |
S-value (bits) |
0.070 |
0.111 |
0.041 |
25.0 |
0.625 |
0.750 |
0.415 |
0.047 |
0.134 |
0.087 |
50.0 |
0.750 |
0.500 |
1.000 |
0.016 |
0.164 |
0.148 |
75.0 |
0.875 |
0.250 |
2.000 |
0.008 |
0.173 |
0.165 |
80.0 |
0.900 |
0.200 |
2.322 |
-0.002 |
0.183 |
0.186 |
85.0 |
0.925 |
0.150 |
2.737 |
-0.016 |
0.196 |
0.212 |
90.0 |
0.950 |
0.100 |
3.322 |
-0.036 |
0.217 |
0.253 |
95.0 |
0.975 |
0.050 |
4.322 |
-0.054 |
0.235 |
0.289 |
97.5 |
0.988 |
0.025 |
5.322 |
-0.076 |
0.257 |
0.332 |
99.0 |
0.995 |
0.010 |
6.644 |
Here we specified the format as “image”, which will give us just that. We can also specify other options such as
(z <- curve_table(intervalsdf[[1]], format = "latex"))
| Lower Limit | Upper Limit | Interval Width | Interval Level (%) | CDF | P-value | S-value (bits) | |
|---|---|---|---|---|---|---|---|
| 2501 | 0.070 | 0.111 | 0.041 | 25.0 | 0.625 | 0.750 | 0.415 |
| 5001 | 0.047 | 0.134 | 0.087 | 50.0 | 0.750 | 0.500 | 1.000 |
| 7501 | 0.016 | 0.164 | 0.148 | 75.0 | 0.875 | 0.250 | 2.000 |
| 8001 | 0.008 | 0.173 | 0.165 | 80.0 | 0.900 | 0.200 | 2.322 |
| 8501 | -0.002 | 0.183 | 0.186 | 85.0 | 0.925 | 0.150 | 2.737 |
| 9001 | -0.016 | 0.196 | 0.212 | 90.0 | 0.950 | 0.100 | 3.322 |
| 9501 | -0.036 | 0.217 | 0.253 | 95.0 | 0.975 | 0.050 | 4.322 |
| 9751 | -0.054 | 0.235 | 0.289 | 97.5 | 0.988 | 0.025 | 5.322 |
| 9901 | -0.076 | 0.257 | 0.332 | 99.0 | 0.995 | 0.010 | 6.644 |
which is useful for inserting the output into a TeX document, and we can also specify options such as
(df <- curve_table(intervalsdf[[1]], format = "data.frame")) #> Lower Limit Upper Limit Interval Width Interval Level (%) CDF P-value #> 2501 0.070 0.111 0.041 25.0 0.625 0.750 #> 5001 0.047 0.134 0.087 50.0 0.750 0.500 #> 7501 0.016 0.164 0.148 75.0 0.875 0.250 #> 8001 0.008 0.173 0.165 80.0 0.900 0.200 #> 8501 -0.002 0.183 0.186 85.0 0.925 0.150 #> 9001 -0.016 0.196 0.212 90.0 0.950 0.100 #> 9501 -0.036 0.217 0.253 95.0 0.975 0.050 #> 9751 -0.054 0.235 0.289 97.5 0.988 0.025 #> 9901 -0.076 0.257 0.332 99.0 0.995 0.010 #> S-value (bits) #> 2501 0.415 #> 5001 1.000 #> 7501 2.000 #> 8001 2.322 #> 8501 2.737 #> 9001 3.322 #> 9501 4.322 #> 9751 5.322 #> 9901 6.644
The options “pptx” and “docx” can also be specified as format options, but specifying these will open those programs if they are installed, which may not be ideal for all because no everyone has access.
Cite R Packages
Please remember to cite the packages that you use.
citation("concurve") #> #> Rafi Z, Vigotsky A (2020). _concurve: Computes and Plots Compatibility #> (Confidence) Intervals, P-Values, S-Values, & Likelihood Intervals to #> Form Consonance, Surprisal, & Likelihood Functions_. R package version #> 2.7.7, <URL: https://CRAN.R-project.org/package=concurve>. #> #> Rafi Z, Greenland S (2020). "Semantic and Cognitive Tools to Aid #> Statistical Science: Replace Confidence and Significance by #> Compatibility and Surprise." _BMC Medical Research Methodology_, *20*, #> 244. ISSN 1471-2288, doi: 10.1186/s12874-020-01105-9 (URL: #> https://doi.org/10.1186/s12874-020-01105-9), <URL: #> https://doi.org/10.1186/s12874-020-01105-9>. #> #> To see these entries in BibTeX format, use 'print(<citation>, #> bibtex=TRUE)', 'toBibtex(.)', or set #> 'options(citation.bibtex.max=999)'. citation("flextable") #> #> To cite package 'flextable' in publications use: #> #> David Gohel (2020). flextable: Functions for Tabular Reporting. R #> package version 0.5.11. https://CRAN.R-project.org/package=flextable #> #> A BibTeX entry for LaTeX users is #> #> @Manual{, #> title = {flextable: Functions for Tabular Reporting}, #> author = {David Gohel}, #> year = {2020}, #> note = {R package version 0.5.11}, #> url = {https://CRAN.R-project.org/package=flextable}, #> } citation("officer") #> #> To cite package 'officer' in publications use: #> #> David Gohel (2020). officer: Manipulation of Microsoft Word and #> PowerPoint Documents. R package version 0.3.14. #> https://CRAN.R-project.org/package=officer #> #> A BibTeX entry for LaTeX users is #> #> @Manual{, #> title = {officer: Manipulation of Microsoft Word and PowerPoint Documents}, #> author = {David Gohel}, #> year = {2020}, #> note = {R package version 0.3.14}, #> url = {https://CRAN.R-project.org/package=officer}, #> }